EXTERNAL PROFILES
Assistant Professor
Dr. Shipan Das Gupta
My research group have extensive research experience in molecular cloning, gene transformation in crop plants, tissue culture, and related molecular biology techniques. Currently, my research group is focused on evaluating the zoonotic risks associated with multidrug-resistant (MDR) pathogenic bacteria transmitted from poultry to humans. To achieve this, we isolate pathogenic bacteria from poultry and characterize their functional properties using a combination of microbiological and molecular biology tools, including whole genome sequencing. In parallel, our group is also working on the development of drought-resistant, high-yielding rice varieties. This work involves both somaclonal variation and advanced genetic engineering approaches, such as the transformation of salt-tolerant genes and functional assessment of their performance.
Biotechnology and Genetic Engineering
BIOGRAPHY
Dr. Shipan Das Gupta was born in Cox’s Bazar and raised in Chittagong, Bangladesh. He completed his Secondary School Certificate (SSC) from Chittagong Collegiate School in 2003 and his Higher Secondary Certificate (HSC) from Government City College in 2005. He went on to pursue a Bachelor’s degree in Genetic Engineering and Biotechnology at the University of Chittagong, graduating in 2011 with the second-highest academic standing in his class. In 2014, Dr. Das Gupta was awarded the prestigious “Scholarship Plus” from the University of Bonn, Germany, to pursue his M.Sc. studies. Upon completion of his Master’s, he was accepted into the international graduate program iGRAD-Plant, a collaborative Ph.D. program jointly offered by Heinrich Heine University Düsseldorf (Germany) and Michigan State University (USA). He successfully completed his Ph.D. in 2018 and continued his postdoctoral research until March 2019. In February 2019, Dr. Das Gupta joined Noakhali Science and Technology University (NSTU) as an Assistant Professor in the Department of Genetic Engineering and Biotechnology, where he continues to serve. During his tenure at NSTU, he has supervised over 12 M.Sc. thesis students and has published more than 16 research articles in Q1 and Q2-ranked international journals. His research group focuses primarily on bioinformatics, microbiology, and molecular biology.
RESEARCH INTERESTS
2014 - 2018
Ph.D.
iGRAD-Plant Graduate program
Heinrich Heine University Dusseldorf, Germany
2012 - 2014
M.Sc.
Institute of Cellular and Molecular Biology of Plant
University of Bonn, Germany
2006 - 2011
B.Sc.
Genetic Engineering and Biotechnology
University of Chittagong
Last updated on 2025-10-21 14:07:12
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AWARDS AND ACHIEVEMENTS
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2025
Journal
An Insight into Bacteriocins for Combating Microbial Infections and Ensuring Food Safety
Authors: Mithu Howlader, Shuvo Chandra Das, Shipan Das Gupta, Dhirendra Nath Barman, Mohammed Mafizul Islam, Md. Easin Mia, Md. Salahuddin & Md. Murad Hossain
Journal: International Journal of Peptide Research and Therapeutics
DOI: 10.1007/s10989-025-10691-5
2025
Journal
Identification of key biomarker genes in liver hepatocellular carcinoma and kidney renal clear cell carcinoma progression: A shared high-throughput screening and molecular docking method with potentials for targeted therapeutic interventions
Authors: Maisha Tasneem, Shipan Das Gupta, Md Jubair Ahmed Jony, Maya Minkara, Rajib Kumar Dey & Jannatul Ferdoush
Journal: Journal of Genetic Engineering and Biotechnology
DOI: doi.org/10.1016/j.jgeb.2025.100497
2025
Journal
Genetic Insights Into Type 2 Diabetes Mellitus Susceptibility: A Case-Control Study of the ADIPOQ rs1501299 Polymorphism in the Population of Noakhali Region of Bangladesh
Authors: Md Anamul Haque, Md Sad Salabi Sawrav, Shipan Das Gupta, Shuvo Chandra Das, Dhirendra Nath Barman, Mohammed Mafizul Islam & Md Murad Hossain
Journal: Genetics Research
DOI: doi.org/10.1155/genr/8818420
2025
Journal
Designing siRNAs against non-structural genes of all serotypes of Dengue virus using RNAi technology--A computational investigation
Authors: Md. Nur Islam, Israt Jahan Asha, Aninda Kumar Gain, Raihanul Islam, Shipan Das Gupta, Md. Murad Hossain, Shuvo Chandra Das, Mohammed Mafizul Islam & Dhirendra Nath Barman
Journal: Journal of Genetic Engineering and Biotechnology
DOI: https://doi.org/10.1016/j.jgeb.2025.100523
2025
Journal
Farnesoid X Receptor (FXR) Agonists and Protein Kinase Regulation in NAFLD and NASH: Mechanisms and Therapeutic Potential
Authors: Ayan Saha, Emily Wood, Luna Omeragic, Maya Minkara, Kethain Marma, Shipan Das Gupta and Jannatul Ferdoush
Journal: Kinases and Phosphatases
DOI: https://doi.org/10.3390/kinasesphosphatases3030016
2025
Journal
Unraveling the structural and functional consequences of non-synonymous single-nucleotide polymorphisms (nsSNPs) in human SOCS2: an in silico approach
Authors: Tanvir Hossain, Md. Nur Islam, Md. Anwar Hossain, Md. Mofizur Rahman, Mohammed Mafizul Islam & Shipan Das Gupta*
Journal: Egyptian Journal of Medical Human Genetics
DOI: 10.1186/s43042-025-00669-9
2025
Journal
A comprehensive in silico investigation unravels the structural and functional consequences of non-synonymous single-nucleotide polymorphisms in human OXTR gene
Authors: Puja Mazumder, Shuvo Chandra Das, Sobuj Mondol, Ibrahim Khalil Afif, Mithu Howlader, Shipan Das Gupta, Md. Murad Hossain & Md. Mijanur Rahman
Journal: Egyptian Journal of Medical Human Genetics
DOI: 10.1186/s43042-025-00680-0
2024
Journal
Whole genome sequencing of multidrug-resistant Klebsiella pneumoniae from poultry in Noakhali, Bangladesh: Assessing risk of transmission to humans in a pilot study
Authors: Md. Adnan Munim, Afroza Akter Tanni , Md Mobarok Hossain, Kallyan Chakma, Adnan Mannan, S.M. Rafiqul Islam, Jully Gogoi Tiwari & Shipan Das Gupta*
Journal: Comparative immunology, microbiology and infectious diseases
DOI: https://doi.org/10.1016/j.cimid.2024.102246
2024
Journal
Multi-drug resistant (MDR) Gram-negative pathogenic bacteria isolated from poultry in the Noakhali region of Bangladesh
Authors: Md. Adnan Munim, Shuvo Chandra Das, Md. Murad Hossain, Ithmam Hami, Mridul Gope Topu & Shipan Das Gupta*
Journal: Plos one
DOI: https://doi.org/10.1371/journal.pone.0292638
2024
Journal
In silico Characterization of a Hypothetical Protein (PBJ89160. 1) from Neisseria meningitidis Exhibits a New Insight on Nutritional Virulence and Molecular Docking to Uncover a Therapeutic Target
Authors: Israt Jahan Asha, Shipan Das Gupta, Md. Murad Hossain, Md. Nur Islam, Nurun Nahar Akter, Mohammed Mafizul Islam, Shuvo Chandra Das & Dhirendra Nath Barman
Journal: Evolutionary Bioinformatics
DOI: doi/full/10.1177/11769343241298307
2024
Journal
Unveiling key genes in esophageal and lung adenocarcinoma progression: A combined high-throughput analysis and molecular docking approach for targeted therapies
Authors: Monira Binte Momin, Md. Anwar Hossain, Jannatul Ferdoush, Alexander Wayne Garrott, Sumaiya Afroz, Tanjina Rahman & Shipan Das Gupta*
Journal: Human Gene
DOI: https://doi.org/10.1016/j.humgen.2024.201327
2024
Journal
A systematic exploration of key candidate genes and pathways in the biogenesis of human gastric cancer: a comprehensive bioinformatics investigation
Authors: Shuhylul Hannan, Ithmam Hami, Rajib Kumar Dey & Shipan Das Gupta*
Journal: Journal of Translational Gastroenterology
DOI: 10.14218/JTG.2023.00072
2024
Journal
Association of SLC30A8 rs13266634 gene polymorphism with type 2 diabetes mellitus (T2DM) in a population of Noakhali, Bangladesh: a case--control study
Authors: Farhana Siddiqi Mitu, Md. Murad Hossain, Shuvo Chandra Das, Md. Mafizul Islam, Dhirendra Nath Barman & Shipan Das Gupta*
Journal: Egyptian Journal of Medical Human Genetics
DOI: 10.1186/s43042-024-00484-8
2024
Journal
In silico analysis of a novel hypothetical protein (YP_498675. 1) from Staphylococcus aureus unravels the protein of tryptophan synthase beta superfamily (Try-synth-beta II)
Authors: Vivian Chakma, Dhirendra Nath Barman, Shuvo Chandra Das, Anwar Hossain, Monira Binte Momin, Maisha Tasneem & Shipan Das Gupta*
Journal: Journal of Genetic Engineering and Biotechnology
DOI: https://doi.org/10.1186/s43141-023-00613-7
2023
Journal
Drought-responsive genes in tomato: meta-analysis of gene expression using machine learning
Authors: Rabiul Haq Chowdhury, Fatiha Sultana Eti, Rayhan Ahmed, Shipan Das Gupta, Pijush Kanti Jhan, Tofazzal Islam, Md. Atiqur Rahman Bhuiyan, Mehede Hassan Rubel & Abul Khayer
Journal: Scientific reports
DOI: doi.org/10.1038/s41598-023-45942-2
2023
Journal
Association of CAPN10 gene (rs3842570) polymorphism with the type 2 diabetes mellitus among the population of Noakhali region in Bangladesh: a case-control study
Authors: Munia Sultana, Md Mafizul Islam, Md Murad Hossain, Md Anisur Rahman, Shuvo Chandra Das, Dhirendra Nath Barman, Farhana Siddiqi Mitu, Shipan Das Gupta*
Journal: Genomics \& Informatics
DOI: doi: 10.5808/gi.23023
2023
Journal
In silico annotation of a hypothetical protein from Listeria monocytogenes EGD-e unfolds a toxin protein of the type II secretion system
Authors: Maisha Tasneem, Shipan Das Gupta, Monira Binte Momin, Kazi Modasser Hossain, Tasnim Binta Osman & Md Fazley Rabbi
Journal: Genomics & Informatics
DOI: doi: 10.5808/gi.22071
2022
Journal
In-silico analysis unravels the structural and functional consequences of non-synonymous SNPs in the human IL-10 gene
Authors: Shuvo Chandra Das, Md. Anisur Rahman & Shipan Das Gupta*
Journal: Egyptian Journal of Medical Human Genetics
DOI: 10.1186/s43042-022-00223-x
2021
Journal
An in-silico approach to design potential siRNAs against the ORF57 of Kaposi’s sarcoma-associated herpesvirus
Authors: Anisur Rahman, Shipan Das Gupta, Md Anisur Rahman & Saheda Tamanna
Journal: Genomics & Informatics
DOI: doi: 10.5808/gi.21057
2021
Journal
Immediate and post-COVID complications of symptomatic and asymptomatic COVID-19 patients in Bangladesh: a cross-sectional retrospective study
Authors: Mohabbat Hossain, Shuvo Chandra Das, Md Thosif Raza, Istiaq Uddin Ahmed, Ishrat Jahan Eva, Tasnimul Karim, Prashanta Chakraborty & Shipan Das Gupta
Journal: Asian Journal of Medical and Biological Research
2019
Journal
The C4Ppc promoters of many C4 grass species share a common regulatory mechanism for gene expression in the mesophyll cell
Authors: Shipan Das Gupta, Myles Levey, Stefanie Schulze, Shanta Karki, Jan Emmerling, Monika Streubel, Udo Gowik, W. Paul Quick, Peter Westhoff
Journal: The Plant Journal
DOI: doi.org/10.1111/tpj.14532
2019
Journal
Reporter‐based forward genetic screen to identify bundle sheath anatomy mutants in A. thaliana
Authors: Florian Döring, Kumari Billakurthi, Udo Gowik, Stefanie Sultmanis, Roxana Khoshravesh, Shipan Das Gupta, Tammy L. Sage, Peter Westhoff
Journal: The Plant Journal
DOI: doi.org/10.1111/tpj.14165
2011
Journal
Assessment of antibacterial, thrombolytic and cytotoxic potential of Cassia alata seed oil.
Authors: Adnan Mannan, MJ Kawser, AM Abu Ahmed, Naznin Nahar Islam, SMM Alam, SMM, Md. Asif Emran Khan Emon & Shipan Das Gupta
Journal: Journal of Applied Pharmaceutical Science
DOI: doi/full/10.5555/20123336881
Journal
Computational approach for the prediction of potential MHC binding peptides and epitope mapping in order to develop sero-diagnostic immunogen against potato virus Y
Authors: Alam, Md Jibran and Ashraf, Kutub Uddin Muhammad and Gupta, Shipan Das and Emon, MAK
Journal: International Journal of Computational Bioinformatics and In Silico Modeling
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- Institutional Email: shipan.bge@nstu.edu.bd
- Personal Email: shipongeb@gmail.com
- Mobile number: 01533746886
- Emergency Contact: 01319027205
- PABX:N/A
- Website:N/A
SOCIAL PROFILES
Department
Biotechnology and Genetic Engineering
Noakhali Science and Technology University